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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13674432_13675936_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13674432 - 13675936
Intron Length:
1505

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGCTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAGAA
U12 Branch Point Sequence:
TAAGTGTTAACT
Flanking Amino Acid:
WGFRHDRSLELEILCSVNIL
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
75.3
40.4
Major BPS
70
0.5
1
67
39.8
Major PPT
86.8
0.83
0.6
80.7
31.3
Minor 5ss
36.8
-1.5
3.5
56.4
47.8
Minor BPS
53.6
0.19
2.1
73.36
43.4

Associated Gene:

Gene:
TMEM185A
Ensembl Gene ID:
ENSAPLG00000003446
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003517
13670065 - 13684265
14201