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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13676145_13677071_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13676145 - 13677071
Intron Length:
927

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TACCTTCTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTAAA
U12 Branch Point Sequence:
TTTCTTTTACCT
Flanking Amino Acid:
TGVWARNPQYRAEGETCVEF
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.85
0.9
75.4
37.3
Major BPS
66.4
0.41
1.1
67.7
36.5
Major PPT
79.1
0.66
0.8
77.4
31
Minor 5ss
40
-1.1
2.8
50
46.3
Minor BPS
66.6
0.6
1.6
84.55
36.3

Associated Gene:

Gene:
TMEM185A
Ensembl Gene ID:
ENSAPLG00000003446
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003517
13670065 - 13684265
14201