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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1369311_1369417_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1369311 - 1369417
Intron Length:
107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCCTC
5'SS Class:
strong_major
3'SS Sequence:
GGCTTCCCGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAG
U12 Branch Point Sequence:
TCCTGCTCAGTG
Flanking Amino Acid:
QGPAPWGGREGIPLATCVGT
Intron Amino Acid Position:
741

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
72.2
39.5
Major BPS
55.8
0.14
1.6
65.3
43.7
Major PPT
63.7
0.31
1
58.4
38.4
Minor 5ss
37
-1.5
3.2
50.1
46.5
Minor BPS
42.8
-0.6
2.1
46.83
46.7

Associated Gene:

Gene:
INPPL1
Ensembl Gene ID:
ENSAPLG00000008443
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025843
1368688 - 1373634
4947