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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13693473_13694667_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13693473 - 13694667
Intron Length:
1195

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCGGCGG
5'SS Class:
major
3'SS Sequence:
TCTCTCTCCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TCTTTTTGGATG
Flanking Amino Acid:
CSLWRLRGAQQAVCAPSRVS
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.1
51.5
46.7
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
82.3
0.73
0.7
80.7
24.6
Minor 5ss
23.6
-3
3.2
29.6
43.2
Minor BPS
51
-0.1
1.5
57.65
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003521
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003600
13693221 - 13701451
8231