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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13694140_13694667_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13694140 - 13694667
Intron Length:
528

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATAG
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTCCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TCTTTTTGGATG
Flanking Amino Acid:
SIVFNNAYAQQAVCAPSRVS
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.8
73.8
33
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
82.3
0.73
0.7
80.7
24.6
Minor 5ss
31.8
-2.1
3
37.5
47.2
Minor BPS
51
-0.1
1.5
57.65
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003521
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027597
13692557 - 13701701
9145
ENSAPLT00000018936
13692557 - 13712108
19552
ENSAPLT00000044687
13692557 - 13713175
20619
ENSAPLT00000038742
13693385 - 13716008
22624
ENSAPLT00000037620
13693385 - 13715611
22227