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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13694846_13695766_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13694846 - 13695766
Intron Length:
921

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTACGGTTT
5'SS Class:
major
3'SS Sequence:
TTACCCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CGCTCTTTACCC
Flanking Amino Acid:
TMSVGKVFHPGVSSNYHDDY
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
72.4
39.5
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
83.6
0.76
0.8
81
30.6
Minor 5ss
41.7
-0.9
3.6
60.9
46
Minor BPS
57.1
0.2
1.7
62.16
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003521
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027597
13692557 - 13701701
9145
ENSAPLT00000018936
13692557 - 13712108
19552
ENSAPLT00000044687
13692557 - 13713175
20619
ENSAPLT00000003600
13693221 - 13701451
8231
ENSAPLT00000038742
13693385 - 13716008
22624
ENSAPLT00000037620
13693385 - 13715611
22227