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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1369624_1369746_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1369624 - 1369746
Intron Length:
123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACCTCCA
5'SS Class:
major
3'SS Sequence:
TTTTTCCCCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTGAA
U12 Branch Point Sequence:
TGATGTTGAAGC
Flanking Amino Acid:
GCSPARPPWRVALRQVPQHG
Intron Amino Acid Position:
672

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.2
62.7
43.7
Major BPS
72
0.55
1.1
63.4
44.3
Major PPT
85.3
0.79
0.7
78
30.8
Minor 5ss
39
-1.2
3
51.6
44.8
Minor BPS
45.4
-0.3
2.1
56.59
41.9

Associated Gene:

Gene:
INPPL1
Ensembl Gene ID:
ENSAPLG00000008443
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025843
1368688 - 1373634
4947