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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13697300_13697922_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
13697300 - 13697922
Intron Length:
623

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAAC
5'SS Class:
strong_major
3'SS Sequence:
TTGCATTGCAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TAATCTTTTATG
Flanking Amino Acid:
KPHIPLRYPQEFLKLYPLEN
Intron Amino Acid Position:
241

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.8
78.2
31.2
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
58
0.18
1.2
58.9
40.8
Minor 5ss
27.1
-2.6
3
33
42.4
Minor BPS
57
0.08
1.7
61.02
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003521
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018936
13692557 - 13712108
19552
ENSAPLT00000044687
13692557 - 13713175
20619
ENSAPLT00000003600
13693221 - 13701451
8231
ENSAPLT00000038742
13693385 - 13716008
22624
ENSAPLT00000037620
13693385 - 13715611
22227
ENSAPLT00000027597
13692557 - 13701701
9145