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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13698094_13698698_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13698094 - 13698698
Intron Length:
605

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTGT
5'SS Class:
strong_major
3'SS Sequence:
TCTTAACTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
GTTTTCTTAACT
Flanking Amino Acid:
PYGPLPDDFQRQIRQSYYAA
Intron Amino Acid Position:
298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
78.8
38.3
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
80.8
0.69
0.9
74.1
35.3
Minor 5ss
45.6
-0.5
2.9
65
46.2
Minor BPS
88.3
1.28
0.9
96.56
28.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003521
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037620
13693385 - 13715611
22227
ENSAPLT00000027597
13692557 - 13701701
9145
ENSAPLT00000018936
13692557 - 13712108
19552
ENSAPLT00000044687
13692557 - 13713175
20619
ENSAPLT00000003600
13693221 - 13701451
8231
ENSAPLT00000038742
13693385 - 13716008
22624