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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13700287_13700951_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13700287 - 13700951
Intron Length:
665

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
ATGCTTCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TGTTTCATTATT
Flanking Amino Acid:
FSHNLGLVPQGQSKKVVELV
Intron Amino Acid Position:
398

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.7
1.12
0.6
91.3
19.2
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
74.7
0.56
0.9
66.6
40
Minor 5ss
44.8
-0.6
2.8
61.1
43.8
Minor BPS
54.2
0.21
1.9
77.3
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003521
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018936
13692557 - 13712108
19552
ENSAPLT00000044687
13692557 - 13713175
20619
ENSAPLT00000003600
13693221 - 13701451
8231
ENSAPLT00000038742
13693385 - 13716008
22624
ENSAPLT00000037620
13693385 - 13715611
22227
ENSAPLT00000027597
13692557 - 13701701
9145