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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13701280_13712006_F

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
13701280 - 13712006
Intron Length:
10727

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATACTGT
5'SS Class:
weak_major
3'SS Sequence:
TTTCCTGATTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
TTTTCCTGATTT
Flanking Amino Acid:
MGYSMRTIDYSSPKSQRSAR
Intron Amino Acid Position:
498

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
64.7
41.9
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
75
0.56
0.9
74.1
35.7
Minor 5ss
53.6
0.12
2.6
73.6
43
Minor BPS
69.7
0.7
1.7
88.99
35.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003521
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018936
13692557 - 13712108
19552