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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13701280_13713126_F

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
13701280 - 13713126
Intron Length:
11847

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATACTGT
5'SS Class:
weak_major
3'SS Sequence:
ATTTGTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
AATTTTATAATT
Flanking Amino Acid:
MGYSMRTIDYRQFCAYGILT
Intron Amino Acid Position:
498

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
64.7
41.9
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
83.8
0.76
0.8
77
36.7
Minor 5ss
53.6
0.12
2.6
73.6
43
Minor BPS
60.6
0.41
1.5
75.94
34.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003521
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044687
13692557 - 13713175
20619