About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13701280_13714224_F

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
13701280 - 13714224
Intron Length:
12945

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATACTGT
5'SS Class:
weak_major
3'SS Sequence:
TTTTCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
CAGTTTTGAAAA
Flanking Amino Acid:
MGYSMRTIDYRLPSGVLRTV
Intron Amino Acid Position:
476

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
64.7
41.9
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
94.1
0.99
0.5
92.8
16.8
Minor 5ss
53.6
0.12
2.6
73.6
43
Minor BPS
48.5
-0.1
1.5
53.88
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003521
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037620
13693385 - 13715611
22227