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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13701280_13715840_F

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
13701280 - 13715840
Intron Length:
14561

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATACTGT
5'SS Class:
weak_major
3'SS Sequence:
TTGTCTTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TAATGCTATATT
Flanking Amino Acid:
MGYSMRTIDYSNKISLVMLW
Intron Amino Acid Position:
498

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
64.7
41.9
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
85.8
0.81
0.8
81.2
30.8
Minor 5ss
53.6
0.12
2.6
73.6
43
Minor BPS
45.1
-0.3
2.3
65.45
45.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003521
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038742
13693385 - 13716008
22624