About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1373366_1373613_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
1373366 - 1373613
Intron Length:
248

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGCACC
5'SS Class:
major
3'SS Sequence:
ATCTCACCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAC
U12 Branch Point Sequence:
TGCCCCCCATCT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
65.8
40.2
Major BPS
76.2
0.65
0.9
77.4
26.5
Major PPT
69.8
0.45
0.9
62.3
33
Minor 5ss
34.8
-1.7
2.8
36.3
40.5
Minor BPS
44.3
-0.3
2.1
63.66
45.8

Associated Gene:

Gene:
INPPL1
Ensembl Gene ID:
ENSAPLG00000008443
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025843
1368688 - 1373634
4947