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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13735023_13736281_R

Intron Information:

Intron Rank:
150586
Intron Class:
major
Intron Phase:
Intron Coordinates:
13735023 - 13736281
Intron Length:
1259

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATCAAT
5'SS Class:
major
3'SS Sequence:
TTTTTTATAATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTATAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
75.9
35
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
80.9
0.69
0.9
78.8
33.1
Minor 5ss
35.7
-1.6
3
48.4
47.4
Minor BPS
67.5
0.55
1.5
79.43
30.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028512
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041069
13734889 - 13736570
1682