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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13735533_13735830_R

Intron Information:

Intron Rank:
150584
Intron Class:
major
Intron Phase:
Intron Coordinates:
13735533 - 13735830
Intron Length:
298

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTTC
5'SS Class:
strong_major
3'SS Sequence:
CTTCATTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
CTGTATATAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
83
30.4
Major BPS
79
0.72
1
78.4
31.2
Major PPT
85.4
0.8
0.8
79.4
32.2
Minor 5ss
41.3
-1
3.3
58.3
46.6
Minor BPS
50.2
0.09
1.8
69.29
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028512
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037834
13734161 - 13736570
2410