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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13739575_13740545_F

Intron Information:

Intron Rank:
142364
Intron Class:
major
Intron Phase:
Intron Coordinates:
13739575 - 13740545
Intron Length:
971

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTATGTGTT
5'SS Class:
strong_major
3'SS Sequence:
ATCTCTCGTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAA
U12 Branch Point Sequence:
GTTCTCTCAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
77.9
36.9
Major BPS
73.4
0.58
0.9
75.3
29.7
Major PPT
71.7
0.49
0.9
70.2
35.8
Minor 5ss
44.3
-0.6
3.2
57.9
46.7
Minor BPS
64.2
0.42
1.5
73
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026670
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048185
13739492 - 13743142
3651