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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13740759_13742114_F

Intron Information:

Intron Rank:
142361
Intron Class:
major
Intron Phase:
Intron Coordinates:
13740759 - 13742114
Intron Length:
1356

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTGTC
5'SS Class:
major
3'SS Sequence:
TCCATTATCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTAAC
U12 Branch Point Sequence:
ACGTCATTAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
72.3
37.8
Major BPS
69.5
0.49
1
71.3
30.3
Major PPT
69.5
0.44
0.9
62
38.5
Minor 5ss
42.9
-0.8
3.1
52.3
45
Minor BPS
66
0.48
1.6
69.97
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026670
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041317
13737535 - 13742316
4782