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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13742230_13742789_F

Intron Information:

Intron Rank:
142359
Intron Class:
major
Intron Phase:
Intron Coordinates:
13742230 - 13742789
Intron Length:
560

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTATAAT
U12 Branch Point Sequence:
CTGTGTATAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
81.4
32.7
Major BPS
70.1
0.5
1.3
72.3
40.4
Major PPT
94.1
0.99
0.5
92.8
16.8
Minor 5ss
35.6
-1.6
2.7
37.5
40.1
Minor BPS
47.1
-0.2
2
58.22
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026670
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048185
13739492 - 13743142
3651
ENSAPLT00000039741
13737535 - 13743142
5608