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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13758531_13759937_F

Intron Information:

Intron Rank:
133406
Intron Class:
major
Intron Phase:
Intron Coordinates:
13758531 - 13759937
Intron Length:
1407

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACACCCG
5'SS Class:
major
3'SS Sequence:
ATTGCCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTATAAA
U12 Branch Point Sequence:
TTTTCTTGTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67
0.4
1.1
50.7
45.9
Major BPS
66.3
0.4
1.1
68
34.4
Major PPT
81.4
0.71
0.8
77.7
36
Minor 5ss
36.5
-1.5
3.3
48.5
47.2
Minor BPS
62.7
0.48
1.8
84.45
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021759
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022714
13758046 - 13759955
1910