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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13760153_13768545_F

Intron Information:

Intron Rank:
133410
Intron Class:
major
Intron Phase:
Intron Coordinates:
13760153 - 13768545
Intron Length:
8393

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAGA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
TCTTCTTTAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.8
33.7
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
91.7
0.94
0.6
87.6
22.6
Minor 5ss
32.8
-2
2.9
40.7
45.1
Minor BPS
75.9
0.79
1.3
79.33
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021759
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040283
13758629 - 13769273
10645