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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13774410_13778949_F

Intron Information:

Intron Rank:
133412
Intron Class:
major
Intron Phase:
Intron Coordinates:
13774410 - 13778949
Intron Length:
4540

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTGTTTGAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTGAC
U12 Branch Point Sequence:
GTTGACAGAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
77.6
31.4
Major BPS
71.3
0.53
1.1
63.1
44.5
Major PPT
63.7
0.31
1.7
76.4
37.7
Minor 5ss
41.6
-0.9
2.7
51
39.8
Minor BPS
43
-0.5
2
56.95
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021759
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043738
13768333 - 13778998
10666