Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13783438_13784799_F

Intron Information:

Intron Rank:

135933

Intron Class:

major

Intron Phase:

Intron Coordinates:

13783438 - 13784799

Intron Length:

1362

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAAATTA

5'SS Class:

strong_major

3'SS Sequence:

CTTTCTGCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTGCAA

U12 Branch Point Sequence:

TTTGCAATGACT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.9

0.8

0.9

80.2

28.1

Major BPS

65.8

0.39

1.4

77.7

37.1

Major PPT

82.3

0.73

0.8

76.9

31.8

Minor 5ss

40.9

-1

3.2

48.2

Minor BPS

54.4

0.22

81.72

39.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023199

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018498

13779993 - 13784836

4844