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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13815359_13815711_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13815359 - 13815711
Intron Length:
353

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
CTAATTACCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
CCTTTCCTAATT
Flanking Amino Acid:
TEGDKKLAVLCYRCLSLLYL
Intron Amino Acid Position:
1101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
71.5
38.5
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
68.7
0.42
0.9
62
38.4
Minor 5ss
35.6
-1.6
2.9
43.1
37.8
Minor BPS
61.3
0.43
1.7
75.59
41.9

Associated Gene:

Gene:
AFF2
Ensembl Gene ID:
ENSAPLG00000003660
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030611
13804280 - 14082183
277904
ENSAPLT00000025697
13804280 - 14095768
291489
ENSAPLT00000003772
13804280 - 14163951
359672
ENSAPLT00000045792
13804280 - 14127400
323121