About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13815784_13818875_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13815784 - 13818875
Intron Length:
3092

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAATGTC
5'SS Class:
major
3'SS Sequence:
CCTTTTTGACAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAC
U12 Branch Point Sequence:
TTCGCTTTACCT
Flanking Amino Acid:
TMYSETVELIRYAMRLKNFT
Intron Amino Acid Position:
1077

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1.2
74.1
34.7
Major BPS
72.7
0.56
0.9
63.4
35.2
Major PPT
62.9
0.29
1.2
64
40.7
Minor 5ss
33
-1.9
3.2
44.2
43.6
Minor BPS
62.5
0.47
1.8
78.9
44

Associated Gene:

Gene:
AFF2
Ensembl Gene ID:
ENSAPLG00000003660
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030611
13804280 - 14082183
277904
ENSAPLT00000025697
13804280 - 14095768
291489
ENSAPLT00000003772
13804280 - 14163951
359672
ENSAPLT00000045792
13804280 - 14127400
323121