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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13822409_13822933_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13822409 - 13822933
Intron Length:
525

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGC|GTAAGTACT
5'SS Class:
major
3'SS Sequence:
TCTGTCTCTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
AAGACTTGAAAT
Flanking Amino Acid:
PRRPKITFDDALHNADYYMQ
Intron Amino Acid Position:
1010

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1.3
75.3
40.8
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
72.3
0.5
1
75.8
33.2
Minor 5ss
39.3
-1.2
2.7
48.5
40.3
Minor BPS
49.3
0.03
1.6
62.92
40.6

Associated Gene:

Gene:
AFF2
Ensembl Gene ID:
ENSAPLG00000003660
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025697
13804280 - 14095768
291489
ENSAPLT00000003772
13804280 - 14163951
359672
ENSAPLT00000045792
13804280 - 14127400
323121
ENSAPLT00000030611
13804280 - 14082183
277904