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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13835443_13874126_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13835443 - 13874126
Intron Length:
38684

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAC
U12 Branch Point Sequence:
GCATACTGACCC
Flanking Amino Acid:
EKTKLRNIPVNGLPVPAAHA
Intron Amino Acid Position:
449

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
84.2
27.2
Major BPS
73.6
0.59
0.9
63.3
35.6
Major PPT
78.7
0.65
0.7
72.6
25.7
Minor 5ss
44.5
-0.6
2.8
60
38.4
Minor BPS
46
-0.3
1.9
54.12
43

Associated Gene:

Gene:
AFF2
Ensembl Gene ID:
ENSAPLG00000003660
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030611
13804280 - 14082183
277904
ENSAPLT00000025697
13804280 - 14095768
291489
ENSAPLT00000003772
13804280 - 14163951
359672
ENSAPLT00000045792
13804280 - 14127400
323121