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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13888311_13925513_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13888311 - 13925513
Intron Length:
37203

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTC|GTAAGTATT
5'SS Class:
major
3'SS Sequence:
TTGTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTGTAAT
U12 Branch Point Sequence:
CTCTCCTTGTTT
Flanking Amino Acid:
KVATKSVPQKSMLEDDLKLS
Intron Amino Acid Position:
419

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.3
83.5
35
Major BPS
66.7
0.41
1.4
69.7
44.2
Major PPT
92.9
0.97
0.7
92.3
26.6
Minor 5ss
43.2
-0.7
2.9
61.1
37.5
Minor BPS
46.2
-0.2
3.5
74.27
43.5

Associated Gene:

Gene:
AFF2
Ensembl Gene ID:
ENSAPLG00000003660
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030611
13804280 - 14082183
277904
ENSAPLT00000025697
13804280 - 14095768
291489
ENSAPLT00000003772
13804280 - 14163951
359672
ENSAPLT00000045792
13804280 - 14127400
323121