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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13925566_13925823_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13925566 - 13925823
Intron Length:
258

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAGGTCTT
5'SS Class:
major
3'SS Sequence:
CCTTTGTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
AATCTTTTGACA
Flanking Amino Acid:
QHLTSGYNVQKWSDPAGKVA
Intron Amino Acid Position:
402

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
75.5
40.6
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
85.1
0.79
0.8
79.6
32.3
Minor 5ss
40.5
-1.1
3.4
58.6
40.3
Minor BPS
61.6
0.36
1.2
66.32
33.2

Associated Gene:

Gene:
AFF2
Ensembl Gene ID:
ENSAPLG00000003660
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045792
13804280 - 14127400
323121
ENSAPLT00000030611
13804280 - 14082183
277904
ENSAPLT00000025697
13804280 - 14095768
291489
ENSAPLT00000003772
13804280 - 14163951
359672