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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13928677_13949919_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13928677 - 13949919
Intron Length:
21243

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTCCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTGTTTTCAAAA
Flanking Amino Acid:
DSSCVEEILREMTHSWPPPL
Intron Amino Acid Position:
359

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.9
83.1
30.9
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
83.4
0.75
0.7
77.7
31.1
Minor 5ss
31.5
-2.1
2.7
34
41.5
Minor BPS
56.7
0.21
1.6
68.18
38.4

Associated Gene:

Gene:
AFF2
Ensembl Gene ID:
ENSAPLG00000003660
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045792
13804280 - 14127400
323121
ENSAPLT00000030611
13804280 - 14082183
277904
ENSAPLT00000025697
13804280 - 14095768
291489
ENSAPLT00000003772
13804280 - 14163951
359672