About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13949965_14036321_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13949965 - 14036321
Intron Length:
86357

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTAAACCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
TTTTCTTTAAAC
Flanking Amino Acid:
PKLNIPPVGEVTLPNDSSCV
Intron Amino Acid Position:
344

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
84.6
33.2
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
67.2
0.39
0.9
60.2
39.7
Minor 5ss
39.2
-1.2
2.8
51.8
39
Minor BPS
82.1
0.99
1.2
87.66
28.2

Associated Gene:

Gene:
AFF2
Ensembl Gene ID:
ENSAPLG00000003660
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030611
13804280 - 14082183
277904
ENSAPLT00000025697
13804280 - 14095768
291489
ENSAPLT00000003772
13804280 - 14163951
359672
ENSAPLT00000045792
13804280 - 14127400
323121