Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1399398_1399644_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1399398 - 1399644

Intron Length:

247

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTGAGTGCT

5'SS Class:

strong_major

3'SS Sequence:

TTCCTCCCCGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCTTAG

U12 Branch Point Sequence:

TTGTCCTTAGCT

Flanking Amino Acid:

TIAVVVYDITNLNSFQQTSK

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.75

0.9

77.7

30.1

Major BPS

54.9

0.12

1.6

53.6

43.8

Major PPT

78.5

0.64

0.7

73.3

24.9

Minor 5ss

31.6

-2.1

3.2

41.8

38.8

Minor BPS

79.2

1.5

92.12

37.2

Associated Gene:

Gene:

RAB41

Ensembl Gene ID:

ENSAPLG00000008341

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008682

1395745 - 1405442

9698