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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1402975_1404792_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1402975 - 1404792
Intron Length:
1818

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAGCAA
5'SS Class:
major
3'SS Sequence:
TGCTATTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTCACTTACCT
Flanking Amino Acid:
SAKTGYNVKQLFRRVAAALP
Intron Amino Acid Position:
149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1.1
59.1
41.5
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
83.2
0.75
0.8
80.5
36.8
Minor 5ss
28
-2.5
3.5
37.4
47.3
Minor BPS
65.8
0.57
1.8
86.76
38.6

Associated Gene:

Gene:
RAB41
Ensembl Gene ID:
ENSAPLG00000008341
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008682
1395745 - 1405442
9698