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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_14043988_14095733_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14043988 - 14095733
Intron Length:
51746

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTCCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
AATAATATACCG
Flanking Amino Acid:
LPKMQQPQHQNHYEQDRSAL
Intron Amino Acid Position:
12

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.81
0.9
75.5
40.6
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
85.2
0.79
0.7
84.4
23.5
Minor 5ss
39.5
-1.2
3
50.7
39.9
Minor BPS
40.9
-0.8
1.9
45.86
40.1

Associated Gene:

Gene:
AFF2
Ensembl Gene ID:
ENSAPLG00000003660
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025697
13804280 - 14095768
291489