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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_14043988_14163934_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14043988 - 14163934
Intron Length:
119947

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGGCTG
5'SS Class:
major
3'SS Sequence:
TTCTCTTCCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
AATAATATACCG
Flanking Amino Acid:
MEQYCCHYEQDRSAL
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
62.2
43.8
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
85.2
0.79
0.7
84.4
23.5
Minor 5ss
29.1
-2.4
3.3
35.3
42.3
Minor BPS
40.9
-0.8
1.9
45.86
40.1

Associated Gene:

Gene:
AFF2
Ensembl Gene ID:
ENSAPLG00000003660
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003772
13804280 - 14163951
359672