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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1404860_1405377_F

Intron Information:

Intron Rank:
5
Intron Class:
minor
Intron Phase:
1
Intron Coordinates:
1404860 - 1405377
Intron Length:
518

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTATCCTTG
5'SS Class:
strong_minor
3'SS Sequence:
CCATCCCCTTCAG|T
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
TCCTTAA
U12 Branch Point Sequence:
ATTTCCTTAACC
Flanking Amino Acid:
DSTPEKSKEDMIDIKLEKPP
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
49.5
-0
1.2
47.3
43.8
Major BPS
69.7
0.49
1
59.9
38.5
Major PPT
74
0.54
0.8
69.9
30.7
Minor 5ss
89.4
1.33
1.1
86.7
30.2
Minor BPS
92.3
1.31
0.7
93.2
23.3

Associated Gene:

Gene:
RAB41
Ensembl Gene ID:
ENSAPLG00000008341
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008682
1395745 - 1405442
9698