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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1408839_1409041_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1408839 - 1409041
Intron Length:
203

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACCGCT
5'SS Class:
major
3'SS Sequence:
CCCAATCCATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTAAC
U12 Branch Point Sequence:
TTCCCCCCAATC
Flanking Amino Acid:
LTYLAQVDPKGSLPKWVVNK
Intron Amino Acid Position:
195

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1.2
69.7
41.3
Major BPS
57.1
0.18
1.1
59
36
Major PPT
62
0.27
0.9
58.8
36.6
Minor 5ss
44.5
-0.6
3.3
65.7
45.4
Minor BPS
49.7
-0
1.9
65.04
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008333
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008651
1407750 - 1409461
1712