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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1412080_1412252_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1412080 - 1412252
Intron Length:
173

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCACG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
GGTTACTGATCA
Flanking Amino Acid:
VDFQDIEHSKAVEILKTARE
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
71.4
40.3
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
90
0.9
0.7
88.2
29.1
Minor 5ss
34.3
-1.8
2.8
40.4
45.5
Minor BPS
49
-0
1.9
63.51
41.9

Associated Gene:

Gene:
PDZD11
Ensembl Gene ID:
ENSAPLG00000021957
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018575
1411870 - 1412990
1121