Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1412352_1412509_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1412352 - 1412509

Intron Length:

158

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGTGTCCC

5'SS Class:

strong_major

3'SS Sequence:

CTGCCCTTCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTGAG

U12 Branch Point Sequence:

TGGTGTTGAGCT

Flanking Amino Acid:

ASQLGIFISKVIPDSDAHRA

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.5

0.74

0.9

67.5

37.7

Major BPS

57.3

0.18

1.6

57.1

49.4

Major PPT

74.3

0.55

0.8

68.5

31.7

Minor 5ss

36.1

-1.6

2.8

44.9

43.1

Minor BPS

-0.2

2.1

65.34

45.2

Associated Gene:

Gene:

PDZD11

Ensembl Gene ID:

ENSAPLG00000021957

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018575

1411870 - 1412990

1121