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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1412792_1412903_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1412792 - 1412903
Intron Length:
112

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
CTCCCCCTCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTCT
U12 Branch Point Sequence:
CTCCCCCTCACA
Flanking Amino Acid:
SPPAWVPPHERLYHPDYNNE
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
36.2
-0.8
4.3
65.7
43.2
Major PPT
74.4
0.55
0.7
67.7
25.8
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
47.8
-0.1
2.1
61.14
44.6

Associated Gene:

Gene:
PDZD11
Ensembl Gene ID:
ENSAPLG00000021957
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018575
1411870 - 1412990
1121