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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1415517_1415623_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1415517 - 1415623
Intron Length:
107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACACT
5'SS Class:
strong_major
3'SS Sequence:
TTGATGCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TGACTCTGAACT
Flanking Amino Acid:
EFVLKVSYLEIYNEDILDLL
Intron Amino Acid Position:
184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
77.8
36.9
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
77.5
0.62
1
73.7
41.7
Minor 5ss
41.4
-1
3
58.6
45.7
Minor BPS
63.1
0.49
1.4
76.31
39.4

Associated Gene:

Gene:
KIF4A
Ensembl Gene ID:
ENSAPLG00000008191
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025805
1413056 - 1434021
20966
ENSAPLT00000008640
1413056 - 1436587
23532
ENSAPLT00000043432
1413056 - 1434021
20966