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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1415717_1416510_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1415717 - 1416510
Intron Length:
794

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCTGTTAG
5'SS Class:
major
3'SS Sequence:
TTCCTGGGTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
GAGAGAATAAAT
Flanking Amino Acid:
IREDPKEGIKIIGLTERSVA
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.3
67.6
40.3
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
65.7
0.35
1
60.3
40.5
Minor 5ss
41
-1
2.6
49.2
47.1
Minor BPS
37.7
-0.8
2.1
50.76
42

Associated Gene:

Gene:
KIF4A
Ensembl Gene ID:
ENSAPLG00000008191
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043432
1413056 - 1434021
20966
ENSAPLT00000025805
1413056 - 1434021
20966
ENSAPLT00000008640
1413056 - 1436587
23532