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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1417004_1417222_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1417004 - 1417222
Intron Length:
219

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCTGTAGG
5'SS Class:
major
3'SS Sequence:
TATTTGTGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAC
U12 Branch Point Sequence:
CTCTACTCACCA
Flanking Amino Acid:
TKAEGDRLKEGININRGLLC
Intron Amino Acid Position:
302

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.3
65.3
46
Major BPS
77.2
0.68
0.8
77.6
26.2
Major PPT
78.1
0.63
1
73.2
41.7
Minor 5ss
36.6
-1.5
2.5
43
43.9
Minor BPS
47.3
-0.2
2
60.21
45.6

Associated Gene:

Gene:
KIF4A
Ensembl Gene ID:
ENSAPLG00000008191
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043432
1413056 - 1434021
20966
ENSAPLT00000025805
1413056 - 1434021
20966
ENSAPLT00000008640
1413056 - 1436587
23532