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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1417343_1418503_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1417343 - 1418503
Intron Length:
1161

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
AGAGCACTGACT
Flanking Amino Acid:
RDSKLTRLLQDSLGGNSHTL
Intron Amino Acid Position:
342

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.2
26.4
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
89.5
0.89
0.6
88.5
20.9
Minor 5ss
32.1
-2
3.5
46.6
48.7
Minor BPS
44.8
-0.3
2
61.34
41.8

Associated Gene:

Gene:
KIF4A
Ensembl Gene ID:
ENSAPLG00000008191
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043432
1413056 - 1434021
20966
ENSAPLT00000025805
1413056 - 1434021
20966
ENSAPLT00000008640
1413056 - 1436587
23532