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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1419782_1420472_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1419782 - 1420472
Intron Length:
691

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
CTTGATATTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TGGTTCTTGATA
Flanking Amino Acid:
AHGGTLPVSINSMAPSENLQ
Intron Amino Acid Position:
421

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
81.6
33.2
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
77.9
0.63
0.9
74
40
Minor 5ss
55.3
0.18
2.7
73.8
36.4
Minor BPS
67.6
0.55
1.2
70.08
36.4

Associated Gene:

Gene:
KIF4A
Ensembl Gene ID:
ENSAPLG00000008191
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043432
1413056 - 1434021
20966
ENSAPLT00000025805
1413056 - 1434021
20966
ENSAPLT00000008640
1413056 - 1436587
23532