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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1421253_1421557_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1421253 - 1421557
Intron Length:
305

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAACTG
5'SS Class:
strong_major
3'SS Sequence:
CTATCCTATCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAC
U12 Branch Point Sequence:
TTTTCCTCTATC
Flanking Amino Acid:
NLQEALVQLQSERAATVEAV
Intron Amino Acid Position:
521

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
68.8
42.1
Major BPS
69.3
0.48
1.1
67
39.5
Major PPT
70.3
0.46
0.9
62.8
38.5
Minor 5ss
34.9
-1.7
3.3
47.4
48
Minor BPS
64.3
0.43
1.9
79.1
36.4

Associated Gene:

Gene:
KIF4A
Ensembl Gene ID:
ENSAPLG00000008191
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043432
1413056 - 1434021
20966
ENSAPLT00000025805
1413056 - 1434021
20966
ENSAPLT00000008640
1413056 - 1436587
23532