About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_142140_151171_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
142140 - 151171
Intron Length:
9032

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
ATCTTTATTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TTATCTTTATTC
Flanking Amino Acid:
NTTGKQLFDQVVKTIGLREV
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
20.5
Major BPS
80
0.75
1
78.6
31
Major PPT
82.4
0.73
0.9
74.2
39.7
Minor 5ss
34.4
-1.8
3.3
48.7
47.5
Minor BPS
67.3
0.52
1.5
74.84
36.2

Associated Gene:

Gene:
MSN
Ensembl Gene ID:
ENSAPLG00000004209
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004362
132274 - 158602
26329
ENSAPLT00000043318
95717 - 160925
65209
ENSAPLT00000040558
142056 - 165018
22963
ENSAPLT00000031998
87586 - 160925
73340
ENSAPLT00000017171
142056 - 167049
24994