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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1422124_1422780_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1422124 - 1422780
Intron Length:
657

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATTCT
5'SS Class:
strong_major
3'SS Sequence:
CTGTCCTTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTTAC
U12 Branch Point Sequence:
TGAGTCTTACTA
Flanking Amino Acid:
QLEPIQSQYQTNIKDLELEV
Intron Amino Acid Position:
605

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
83.8
28
Major BPS
63.8
0.34
1.2
57.4
41.4
Major PPT
77.3
0.62
0.8
69.5
36.8
Minor 5ss
42.2
-0.9
2.9
59.5
45
Minor BPS
50.5
0.01
1.7
60.01
40.5

Associated Gene:

Gene:
KIF4A
Ensembl Gene ID:
ENSAPLG00000008191
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043432
1413056 - 1434021
20966
ENSAPLT00000025805
1413056 - 1434021
20966
ENSAPLT00000008640
1413056 - 1436587
23532