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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_14242606_14245021_R

Intron Information:

Intron Rank:
151160
Intron Class:
major
Intron Phase:
Intron Coordinates:
14242606 - 14245021
Intron Length:
2416

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
TCTGACTCTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
TGATTCATAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
81.2
32.7
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
76.6
0.6
0.9
69
36.9
Minor 5ss
41.5
-0.9
2.8
57
41.2
Minor BPS
67.7
0.63
1.6
82.67
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028839
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046684
14239194 - 14248067
8874